[LPS-91813] Uploading a HDF5 file (application/x-hdf) fails with NoClassDefFoundError during reindex - Liferay Issues

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Details

Type: Bug
Status: Closed
Resolution: Fixed
Affects Version/s: 7.0.6 CE GA7, 7.0.X, 7.1.X, Master
Fix Version/s: 7.0.0 DXP FP82, 7.0.10.12 DXP SP12, 7.0.X, 7.1.3 CE GA4, 7.1.10 DXP FP11, 7.1.X, Master
Component/s: Documents & Media
Labels:
- liferay-fixpack-de-82-7010
- liferay-fixpack-dxp-11-7110

Branch Version/s:

7.1.x, 7.0.x
Backported to Branch:

Committed
Fix Priority:
3
Liferay Contributor's Agreement:

Accept
Git Pull Request:
https://github.com/brianchandotcom/liferay-portal/pull/70688

Description

Steps to reproduce
Upload a H5 file ( h5ex_d_soint.h5 ) to Documents and Media (get one from https://support.hdfgroup.org/ftp/HDF5/examples/files/exbyapi/)

Actual Result: extracting data fails during indexing with

2019-03-22 14:34:25.907 ERROR [http-nio-8080-exec-5][FileImpl:480] java.lang.NoClassDefFoundError: ucar/unidata/io/RandomAccessFile
java.lang.NoClassDefFoundError: ucar/unidata/io/RandomAccessFile
	at org.apache.tika.parser.hdf.HDFParser.parse(HDFParser.java:88)
	at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
	at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
	at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:143)
	at org.apache.tika.Tika.parseToString(Tika.java:527)
	at com.liferay.portal.util.FileImpl.extractText(FileImpl.java:457)
	at com.liferay.portal.kernel.util.FileUtil.extractText(FileUtil.java:163)
	at com.liferay.portal.kernel.search.DocumentImpl.addFile(DocumentImpl.java:201)
	at com.liferay.document.library.internal.search.spi.model.index.contributor.DLFileEntryModelDocumentContributor.contribute(DLFileEntryModelDocumentContributor.java:113)
	at com.liferay.document.library.internal.search.spi.model.index.contributor.DLFileEntryModelDocumentContributor.contribute(DLFileEntryModelDocumentContributor.java:60)
	at com.liferay.portal.search.internal.indexer.IndexerDocumentBuilderImpl.lambda$getDocument$1(IndexerDocumentBuilderImpl.java:57)
	at java.lang.Iterable.forEach(Iterable.java:75)
	at com.liferay.portal.search.internal.indexer.IndexerDocumentBuilderImpl.getDocument(IndexerDocumentBuilderImpl.java:55)
	at com.liferay.portal.search.internal.indexer.IndexerWriterImpl.reindex(IndexerWriterImpl.java:241)
	at com.liferay.portal.search.internal.indexer.IndexerWriterImpl.lambda$reindex$0(IndexerWriterImpl.java:166)
	at java.util.Optional.ifPresent(Optional.java:159)
	at com.liferay.portal.search.internal.indexer.IndexerWriterImpl.reindex(IndexerWriterImpl.java:166)
	at com.liferay.portal.search.internal.indexer.DefaultIndexer.reindex(DefaultIndexer.java:284)
	at com.liferay.portal.search.buffer.NoAutoCommitIndexer.reindex(NoAutoCommitIndexer.java:275)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.liferay.portal.search.buffer.IndexerRequest.execute(IndexerRequest.java:99)
	at com.liferay.portal.search.internal.buffer.BaseIndexerRequestBufferExecutor.executeIndexerRequest(BaseIndexerRequestBufferExecutor.java:65)
	at com.liferay.portal.search.internal.buffer.DefaultIndexerRequestBufferExecutor.execute(DefaultIndexerRequestBufferExecutor.java:77)
	at com.liferay.portal.search.internal.buffer.BaseIndexerRequestBufferExecutor.execute(BaseIndexerRequestBufferExecutor.java:35)
	at com.liferay.portal.search.internal.buffer.IndexerRequestBufferTransactionLifecycleListener.committed(IndexerRequestBufferTransactionLifecycleListener.java:46)
	at com.liferay.portal.kernel.transaction.TransactionLifecycleNotifier.fireTransactionCommittedEvent(TransactionLifecycleNotifier.java:70)
	at com.liferay.portal.kernel.transaction.TransactionLifecycleNotifier$1.doCommitted(TransactionLifecycleNotifier.java:39)
	at com.liferay.portal.kernel.transaction.NewTransactionLifecycleListener.committed(NewTransactionLifecycleListener.java:29)
	at com.liferay.portal.kernel.transaction.TransactionLifecycleManager.fireTransactionCommittedEvent(TransactionLifecycleManager.java:33)
	at com.liferay.portal.spring.transaction.DefaultTransactionExecutor._commit(DefaultTransactionExecutor.java:108)
	at com.liferay.portal.spring.transaction.DefaultTransactionExecutor._execute(DefaultTransactionExecutor.java:136)
	at com.liferay.portal.spring.transaction.DefaultTransactionExecutor.execute(DefaultTransactionExecutor.java:51)
	at com.liferay.portal.spring.transaction.TransactionInterceptor.invoke(TransactionInterceptor.java:59)
	at com.liferay.portal.spring.aop.AopMethodInvocation.proceed(AopMethodInvocation.java:51)
	at com.liferay.portal.service.ServiceContextAdvice.invoke(ServiceContextAdvice.java:46)
	at com.liferay.portal.spring.aop.AopMethodInvocation.proceed(AopMethodInvocation.java:51)
	at com.liferay.portal.spring.aop.ChainableMethodAdvice.invoke(ChainableMethodAdvice.java:70)
	at com.liferay.portal.spring.aop.AopMethodInvocation.proceed(AopMethodInvocation.java:51)
	at com.liferay.portal.spring.aop.AopInvocationHandler.invoke(AopInvocationHandler.java:44)
	at com.sun.proxy.$Proxy71.addFileEntry(Unknown Source)
	at com.liferay.document.library.web.internal.portlet.action.EditFileEntryMVCActionCommand.updateFileEntry(EditFileEntryMVCActionCommand.java:958)
	at com.liferay.document.library.web.internal.portlet.action.EditFileEntryMVCActionCommand.doProcessAction(EditFileEntryMVCActionCommand.java:493)
	at com.liferay.portal.kernel.portlet.bridges.mvc.BaseMVCActionCommand.processAction(BaseMVCActionCommand.java:61)
	at com.liferay.portal.kernel.portlet.bridges.mvc.MVCPortlet.callActionMethod(MVCPortlet.java:378)
	at com.liferay.portal.kernel.portlet.LiferayPortlet.processAction(LiferayPortlet.java:97)
	at com.liferay.portal.kernel.portlet.bridges.mvc.MVCPortlet.processAction(MVCPortlet.java:260)
	at com.liferay.portlet.internal.FilterChainImpl.doFilter(FilterChainImpl.java:77)
	at com.liferay.portal.kernel.portlet.PortletFilterUtil.doFilter(PortletFilterUtil.java:50)
	at com.liferay.portal.kernel.servlet.PortletServlet.service(PortletServlet.java:108)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:741)
	at org.eclipse.equinox.http.servlet.internal.registration.EndpointRegistration.service(EndpointRegistration.java:153)
	at org.eclipse.equinox.http.servlet.internal.servlet.ResponseStateHandler.processRequest(ResponseStateHandler.java:62)
	at org.eclipse.equinox.http.servlet.internal.context.DispatchTargets.doDispatch(DispatchTargets.java:120)
	at org.eclipse.equinox.http.servlet.internal.servlet.RequestDispatcherAdaptor.include(RequestDispatcherAdaptor.java:48)
	at com.liferay.portlet.internal.InvokerPortletImpl.invoke(InvokerPortletImpl.java:564)
	at com.liferay.portlet.internal.InvokerPortletImpl.invokeAction(InvokerPortletImpl.java:610)
	at com.liferay.portlet.internal.InvokerPortletImpl.processAction(InvokerPortletImpl.java:299)
	at com.liferay.portal.monitoring.internal.portlet.MonitoringInvokerPortlet.processAction(MonitoringInvokerPortlet.java:216)
	at com.liferay.portlet.internal.PortletContainerImpl._processAction(PortletContainerImpl.java:491)
	at com.liferay.portlet.internal.PortletContainerImpl.lambda$processAction$0(PortletContainerImpl.java:148)
	at com.liferay.portlet.internal.PortletContainerImpl._preserveGroupIds(PortletContainerImpl.java:396)
	at com.liferay.portlet.internal.PortletContainerImpl.processAction(PortletContainerImpl.java:141)
	at com.liferay.portlet.SecurityPortletContainerWrapper.processAction(SecurityPortletContainerWrapper.java:95)
	at com.liferay.portlet.RestrictPortletContainerWrapper.processAction(RestrictPortletContainerWrapper.java:78)
	at com.liferay.portal.kernel.portlet.PortletContainerUtil.processAction(PortletContainerUtil.java:118)
	at com.liferay.portal.action.LayoutAction.processLayout(LayoutAction.java:344)
	at com.liferay.portal.action.LayoutAction.execute(LayoutAction.java:172)
	at com.liferay.portal.struts.PortalRequestProcessor._process(PortalRequestProcessor.java:405)
	at com.liferay.portal.struts.PortalRequestProcessor.process(PortalRequestProcessor.java:154)
	at com.liferay.portal.internal.servlet.MainServlet.doPost(MainServlet.java:208)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:660)
	at com.liferay.portal.internal.servlet.MainServlet.service(MainServlet.java:620)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:741)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:119)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.uploadservletrequest.UploadServletRequestFilter.processFilter(UploadServletRequestFilter.java:111)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.servlet.filters.password.modified.PasswordModifiedFilter.processFilter(PasswordModifiedFilter.java:58)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.secure.BaseAuthFilter.processFilter(BaseAuthFilter.java:340)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.monitoring.internal.servlet.filter.MonitoringFilter.processFilter(MonitoringFilter.java:178)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilter.doFilter(InvokerFilter.java:101)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:712)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:459)
	at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:384)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:312)
	at com.liferay.friendly.url.internal.servlet.FriendlyURLServlet.service(FriendlyURLServlet.java:372)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:741)
	at com.liferay.portal.servlet.ServletAdapter.service(ServletAdapter.java:98)
	at javax.servlet.http.HttpServlet.service(HttpServlet.java:741)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:119)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.uploadservletrequest.UploadServletRequestFilter.processFilter(UploadServletRequestFilter.java:111)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.strip.StripFilter.processFilter(StripFilter.java:341)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.i18n.I18nFilter.processFilter(I18nFilter.java:358)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.servlet.filters.password.modified.PasswordModifiedFilter.processFilter(PasswordModifiedFilter.java:58)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.secure.BaseAuthFilter.processFilter(BaseAuthFilter.java:340)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.etag.ETagFilter.processFilter(ETagFilter.java:88)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.autologin.AutoLoginFilter.processFilter(AutoLoginFilter.java:260)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.sharepoint.SharepointFilter.processFilter(SharepointFilter.java:88)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.servlet.filters.virtualhost.VirtualHostFilter.processFilter(VirtualHostFilter.java:263)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.BaseFilter.processFilter(BaseFilter.java:144)
	at com.liferay.portal.monitoring.internal.servlet.filter.MonitoringFilter.processFilter(MonitoringFilter.java:178)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDirectCallFilter(InvokerFilterChain.java:188)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:96)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDirectCallFilter(InvokerFilterChain.java:188)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:96)
	at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:176)
	at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:145)
	at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:92)
	at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:389)
	at com.liferay.portal.servlet.filters.urlrewrite.UrlRewriteFilter.processFilter(UrlRewriteFilter.java:65)
	at com.liferay.portal.kernel.servlet.BaseFilter.doFilter(BaseFilter.java:49)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDoFilter(InvokerFilterChain.java:207)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:112)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDirectCallFilter(InvokerFilterChain.java:168)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:96)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDirectCallFilter(InvokerFilterChain.java:168)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:96)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.processDirectCallFilter(InvokerFilterChain.java:188)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilterChain.doFilter(InvokerFilterChain.java:96)
	at com.liferay.portal.kernel.servlet.filters.invoker.InvokerFilter.doFilter(InvokerFilter.java:101)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:491)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:139)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
	at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:668)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
	at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:408)
	at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
	at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:764)
	at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1388)
	at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
	at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: ucar.unidata.io.RandomAccessFile
	at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1309)
	at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1138)
	... 205 more
Exception in thread "liferay/document_library_raw_metadata_processor-1" java.lang.NoClassDefFoundError: ucar/unidata/io/RandomAccessFile
	at org.apache.tika.parser.hdf.HDFParser.parse(HDFParser.java:88)
	at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
	at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
	at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:143)
	at com.liferay.portal.metadata.TikaRawMetadataProcessor.extractMetadata(TikaRawMetadataProcessor.java:82)
	at com.liferay.portal.metadata.TikaRawMetadataProcessor.extractMetadata(TikaRawMetadataProcessor.java:153)
	at com.liferay.portal.metadata.BaseRawMetadataProcessor.getRawMetadataMap(BaseRawMetadataProcessor.java:71)
	at com.liferay.portal.kernel.metadata.RawMetadataProcessorUtil.getRawMetadataMap(RawMetadataProcessorUtil.java:40)
	at com.liferay.portlet.documentlibrary.util.RawMetadataProcessorImpl.saveMetadata(RawMetadataProcessorImpl.java:131)
	at com.liferay.document.library.kernel.util.RawMetadataProcessorUtil.saveMetadata(RawMetadataProcessorUtil.java:113)
	at com.liferay.portlet.documentlibrary.messaging.RawMetadataProcessorMessageListener.doReceive(RawMetadataProcessorMessageListener.java:34)
	at com.liferay.portal.kernel.messaging.BaseMessageListener.receive(BaseMessageListener.java:26)
	at com.liferay.portal.kernel.messaging.InvokerMessageListener.receive(InvokerMessageListener.java:74)
	at com.liferay.portal.kernel.messaging.SerialDestination$1.run(SerialDestination.java:58)
	at com.liferay.portal.kernel.concurrent.ThreadPoolExecutor$WorkerTask._runTask(ThreadPoolExecutor.java:752)
	at com.liferay.portal.kernel.concurrent.ThreadPoolExecutor$WorkerTask.run(ThreadPoolExecutor.java:664)
	at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: ucar.unidata.io.RandomAccessFile
	at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1309)
	at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1138)
	... 17 more

Expected Result: No error.
Replacing netcdf.jar in WEB-INF/lib with netcdf-4.3.22.jar resolves the issue
Additional info: https://www.unidata.ucar.edu/software/thredds/current/netcdf-java/documentation.htm Looks like 4.6.13 is the latest version, though it's "flat" and includes a lots of things we don't really need.

Reproduced on liferay-portal/[email protected]

Original report

After upgrading to CE GA7, when reindexing, get a class not found exception

2019-03-08 16:16:24.672 ERROR [liferay/background_task-1][FileImpl:480] java.lang.NoClassDefFoundError: ucar/unidata/io/RandomAccessFile
java.lang.NoClassDefFoundError: ucar/unidata/io/RandomAccessFile
 at org.apache.tika.parser.hdf.HDFParser.parse(HDFParser.java:88)
 at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
 at org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:280)
 at org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
 at org.apache.tika.Tika.parseToString(Tika.java:527)
 at com.liferay.portal.util.FileImpl.extractText(FileImpl.java:458)
 at com.liferay.portal.kernel.util.FileUtil.extractText(FileUtil.java:217)
 at com.liferay.portal.kernel.search.DocumentImpl.addFile(DocumentImpl.java:199)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer.doGetDocument(DLFileEntryIndexer.java:414)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer.doGetDocument(DLFileEntryIndexer.java:101)
 at com.liferay.portal.kernel.search.BaseIndexer.getDocument(BaseIndexer.java:176)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer$2.performAction(DLFileEntryIndexer.java:651)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer$2.performAction(DLFileEntryIndexer.java:646)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery.performAction(DefaultActionableDynamicQuery.java:405)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery$1.call(DefaultActionableDynamicQuery.java:315)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery$1.call(DefaultActionableDynamicQuery.java:277)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery.doPerformActions(DefaultActionableDynamicQuery.java:335)
 at com.liferay.portal.kernel.dao.orm.IndexableActionableDynamicQuery.doPerformActions(IndexableActionableDynamicQuery.java:107)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery.performActions(DefaultActionableDynamicQuery.java:86)
 at com.liferay.portal.kernel.dao.orm.IndexableActionableDynamicQuery.performActions(IndexableActionableDynamicQuery.java:65)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer.reindexFileEntries(DLFileEntryIndexer.java:668)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer.doReindex(DLFileEntryIndexer.java:584)
 at com.liferay.portal.kernel.search.BaseIndexer.reindex(BaseIndexer.java:577)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer$3.performAction(DLFileEntryIndexer.java:691)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer$3.performAction(DLFileEntryIndexer.java:677)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery.performAction(DefaultActionableDynamicQuery.java:405)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery$1.call(DefaultActionableDynamicQuery.java:315)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery$1.call(DefaultActionableDynamicQuery.java:277)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery.doPerformActions(DefaultActionableDynamicQuery.java:335)
 at com.liferay.portal.kernel.dao.orm.DefaultActionableDynamicQuery.performActions(DefaultActionableDynamicQuery.java:86)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer.reindexFolders(DLFileEntryIndexer.java:696)
 at com.liferay.portlet.documentlibrary.util.DLFileEntryIndexer.doReindex(DLFileEntryIndexer.java:576)
 at com.liferay.portal.kernel.search.BaseIndexer.reindex(BaseIndexer.java:577)
 at com.liferay.portal.search.internal.background.task.ReindexSingleIndexerBackgroundTaskExecutor.reindex(ReindexSingleIndexerBackgroundTaskExecutor.java:81)
 at com.liferay.portal.search.internal.background.task.ReindexBackgroundTaskExecutor.execute(ReindexBackgroundTaskExecutor.java:54)
 at com.liferay.portal.kernel.backgroundtask.SerialBackgroundTaskExecutor.execute(SerialBackgroundTaskExecutor.java:54)
 at com.liferay.portal.kernel.backgroundtask.DelegatingBackgroundTaskExecutor.execute(DelegatingBackgroundTaskExecutor.java:43)
 at com.liferay.portal.kernel.backgroundtask.ThreadLocalAwareBackgroundTaskExecutor.execute(ThreadLocalAwareBackgroundTaskExecutor.java:56)
 at com.liferay.portal.background.task.internal.messaging.BackgroundTaskMessageListener.doReceive(BackgroundTaskMessageListener.java:125)
 at com.liferay.portal.kernel.messaging.BaseMessageListener.receive(BaseMessageListener.java:26)
 at com.liferay.portal.kernel.messaging.InvokerMessageListener.receive(InvokerMessageListener.java:74)
 at com.liferay.portal.kernel.messaging.ParallelDestination$1.run(ParallelDestination.java:52)
 at com.liferay.portal.kernel.concurrent.ThreadPoolExecutor$WorkerTask._runTask(ThreadPoolExecutor.java:756)
 at com.liferay.portal.kernel.concurrent.ThreadPoolExecutor$WorkerTask.run(ThreadPoolExecutor.java:667)
 at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.ClassNotFoundException: ucar.unidata.io.RandomAccessFile
 at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1308)
 at org.apache.catalina.loader.WebappClassLoaderBase.loadClass(WebappClassLoaderBase.java:1142)
 ... 45 more

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h5ex_d_soint.h5
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22/Mar/19 6:43 AM

Activity

People

Assignee:: Patricia Perez

Reporter:: Barrie Selack

Participants of an Issue:: Barrie Selack, Milen Dyankov, Patricia Perez, Tibor Lipusz

Recent user:: Kiyoshi Lee

Votes:: 0 Vote for this issue

Watchers:: 2 Start watching this issue

Dates

Created:: 08/Mar/19 8:31 AM

Updated:: 09/Nov/20 4:34 PM

Resolved:: 03/Apr/19 11:17 AM

Days since last comment:: 3 years, 48 weeks, 4 days ago

Packages

Version	Package
7.0.0 DXP FP82
7.0.10.12 DXP SP12
7.0.X
7.1.3 CE GA4
7.1.10 DXP FP11
7.1.X
Master